Index

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__init__() (pyholoscope.FocusStack method) (pyholoscope.Holo method) (pyholoscope.Propagator method) (pyholoscope.PropLUT method) (pyholoscope.Roi method)

A

add_depth() (pyholoscope.FocusStack method) add_idx() (pyholoscope.FocusStack method)

amplitude() (in module pyholoscope) auto_find_off_axis_mod() (pyholoscope.Holo method) auto_focus() (pyholoscope.Holo method)

B

brenner() (in module pyholoscope)

C

calib_off_axis() (pyholoscope.Holo method) circ_cosine_window() (in module pyholoscope) circ_window() (in module pyholoscope) clear_auto_focus_propagator_LUT() (pyholoscope.Holo method) clear_background() (pyholoscope.Holo method) clear_inside() (pyholoscope.Roi method)

clear_normalise() (pyholoscope.Holo method) clear_outside() (pyholoscope.Roi method) clear_propagator_LUT() (pyholoscope.Holo method) clear_window() (pyholoscope.Holo method) constrain() (pyholoscope.Roi method) crop() (pyholoscope.Roi method) cshow() (in module pyholoscope)

D

dark_focus() (in module pyholoscope) depth_stack() (pyholoscope.Holo method)

depth_to_index() (pyholoscope.FocusStack method) dimensions() (in module pyholoscope)

E

extract_central() (in module pyholoscope)

F

find_focus() (in module pyholoscope) (pyholoscope.Holo method) focus_score() (in module pyholoscope)

focus_score_curve() (in module pyholoscope) FocusStack (class in pyholoscope) fourier_plane_display() (in module pyholoscope)

G

get16bit() (in module pyholoscope) get8bit() (in module pyholoscope) get_depth() (pyholoscope.FocusStack method)

get_depth_intensity() (pyholoscope.FocusStack method) get_focus_score_methods() (in module pyholoscope), [1] get_index() (pyholoscope.FocusStack method) get_index_intensity() (pyholoscope.FocusStack method)

H

has_attributes() (pyholoscope.Propagator method)

Holo (class in pyholoscope)

I

index_to_depth() (pyholoscope.FocusStack method)

invert() (in module pyholoscope)

L

load_image() (in module pyholoscope)

M

magnitude() (in module pyholoscope) make_auto_focus_propagator_LUT() (pyholoscope.Holo method)

make_propagator_LUT() (pyholoscope.Holo method) mean_phase() (in module pyholoscope)

N

norm_var() (in module pyholoscope)

O

obtain_tilt() (in module pyholoscope) off_axis() (in module pyholoscope.sim) off_axis_demod() (in module pyholoscope) off_axis_demod_pixel_size() (in module pyholoscope)

off_axis_find_crop_radius() (in module pyholoscope) off_axis_find_mod() (in module pyholoscope) off_axis_predict_mod() (in module pyholoscope) off_axis_predict_tilt_angle() (in module pyholoscope)

P

peak() (in module pyholoscope) phase() (in module pyholoscope) phase_gradient() (in module pyholoscope) phase_gradient_amp() (in module pyholoscope) phase_gradient_dir() (in module pyholoscope) phase_unwrap() (in module pyholoscope) pre_process() (in module pyholoscope)

process() (pyholoscope.Holo method) Propagator (class in pyholoscope) propagator() (in module pyholoscope) (pyholoscope.PropLUT method) propagator_numba() (in module pyholoscope) propagator_size_for_roi() (in module pyholoscope) PropLUT (class in pyholoscope)

R

refocus() (in module pyholoscope) refocus_and_score() (in module pyholoscope) refocus_stack() (in module pyholoscope)

relative_phase() (in module pyholoscope) relative_phase_self() (in module pyholoscope) Roi (class in pyholoscope)

S

save_amplitude_image16() (in module pyholoscope) save_amplitude_image8() (in module pyholoscope) save_image() (in module pyholoscope) save_phase_image() (in module pyholoscope) set_find_focus_parameters() (pyholoscope.Holo method)

set_off_axis_mod() (pyholoscope.Holo method) sobel() (in module pyholoscope) sobel_variance() (in module pyholoscope) square_cosine_window() (in module pyholoscope) sum_focus() (in module pyholoscope) synthetic_DIC() (in module pyholoscope)

U

update_auto_window() (pyholoscope.Holo method)

update_propagator() (pyholoscope.Holo method)

V

variance() (in module pyholoscope)

W

write_intensity_to_tif() (pyholoscope.FocusStack method)

write_phase_to_tif() (pyholoscope.FocusStack method)